Gut Microbiota Drugs: How Microbes Are Reshaping Treatments


From IBS to cancer, the gut microbiota drug concept is reshaping medicine by showing how microbial communities can influence treatment outcomes. Scientists are uncovering how microbes affect drug metabolism, immune modulation, and toxicity, turning microbiome science into practical strategies that enhance efficacy and reduce side effects. As this field advances, a gut microbiota drug may be designed to recalibrate the gut ecosystem to improve response to therapy, unlock new indications, and personalize care like never before. InnerBuddies sits at the heart of this transformation with a white-label Gut Health Operating System that companies can use to power their gut microbiome testing products. This modular platform features a Gut Microbiome Health Index (0–100), built through an exclusive IP deal with EAFIT University in Colombia, providing a standardized readout for microbiome health in the context of microbiome-driven therapies. It also includes a top 40 bacteria panel that shows abundances against a healthy cohort, and a comprehensive map of bacterial functions labeled positive or negative so clinicians can gauge pathway-level influence on patient outcomes. In addition, Target Group analysis dives into functional pathways relevant to specific groups—Healthy Aging, Endurance Sport, Power Sport, Skin & Hair Health, and more—helping teams tailor interventions around meaningful clinical and performance goals. Personalization is central to turning microbiome insights into real-world benefits. InnerBuddies leverages data from 3‑day food diaries and stool samples to power personalized nutrition advice and tailored probiotic and prebiotic recommendations. The platform hosts a large database that links individual foods to microbiome changes, enabling nutrition plans that harmonize with a patient’s gut microbiota drug strategies and other microbiome-targeted therapeutics. By aligning diet, microbial function, and therapeutic intent, this approach aims to improve efficacy, reduce variability, and drive ongoing breakthroughs in how patients respond to treatment. Beyond science, InnerBuddies serves both B2B and consumer audiences with the same proven capabilities. For enterprises, the white-label OS can be integrated into your own product line to power scalable gut health testing programs; for consumers, InnerBuddies offers direct-to-consumer gut test solutions that mirror partner capabilities. Learn more about the practical tools on the product page: InnerBuddies microbiome test, about ongoing access and benefits on the subscription page: InnerBuddies gut health membership, and about collaboration opportunities on the B2B page: InnerBuddies become a partner.